MRIQC: individual T1w report

Summary

  • BIDS filename: sub-4036_ses-1_T1w.
  • Date and time: 2022-12-06, 02:00.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv1.0232978017333543
cnr1.2840899196407984
efc0.6335241590598466
fber514.4612899810963
fwhmavg4.142346666666667
fwhmx4.05624
fwhmy4.60227
fwhmz3.76853
icvscsf0.2254102471672266
icvsgm0.3899103492710295
icvswm0.38467940356174385
inumed1.7774620056152344
inurange0.832846093177795
qi10.0009999285765302478
qi20.0010324478561617736
rpvecsf30.16675479789011
rpvegm16.987983789592608
rpvewm20.81117956947475
sizex176
sizey256
sizez256
snrcsf3.354944938975621
snrgm8.294529298170461
snrtotal9.344653277040997
snrwm16.38448559397691
snrdcsf14.60194683524984
snrdgm30.887209430649595
snrdtotal27.45122411210933
snrdwm36.86451607042856
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk230.92983780299227
summarybgmad17.771463123731444
summarybgmean35.25242512783319
summarybgmedian24.080843210220337
summarybgn2172743.0
summarybgp057.202752210199833
summarybgp9587.5080641657114
summarybgstdv44.90967104020305
summarycsfk0.11721529355548954
summarycsfmad113.402654820941
summarycsfmean416.94393562127897
summarycsfmedian396.09761967882514
summarycsfn23729.0
summarycsfp05258.4820509582758
summarycsfp95643.4100295230746
summarycsfstdv118.06133349977036
summarygmk-0.47035197167252685
summarygmmad109.33832917380958
summarygmmean841.4184008215672
summarygmmedian837.8574632573873
summarygmn7332.0
summarygmp05681.8963771536946
summarygmp951009.7774831760676
summarygmstdv101.00637349729637
summarywmk0.5646721417977658
summarywmmad56.58178842084899
summarywmmean1006.384157023107
summarywmmedian1000.000015810132
summarywmn179172.0
summarywmp05916.4158390425146
summarywmp951117.4478783421218
summarywmstdv61.0331779692368
tpmoverlapcsf0.1622627228498459
tpmoverlapgm0.4378540515899658
tpmoverlapwm0.49971285462379456
wm2max0.5617347773354995
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime15:29:56.865000
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
Dcm2bidsVersion2.1.6
DeviceSerialNumber67034
DwellTime3e-06
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[-0.00204884, 0.95387, 0.300213, -0.0348353, 0.299963, -0.953314]
ImageOrientationTextSag>Tra(1.9)>Cor(-0.7)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InstitutionalDepartmentNameDepartment
InversionTime1.16
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
MatrixCoilModeGRAPPA
ModalityMR
NumberOfAverages3
ParallelReductionFactorInPlane2
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps191
PhaseResolution1
PixelBandwidth650
ProcedureStepDescriptionfMRI_STUDIES^MITTAL
ProtocolNametfl_epinav_ME3_1mm_p2
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE36
RepetitionTime2.17
SAR0.0294558
ScanOptionsIR\PFP\WE
ScanningSequenceGR\IR
SequenceNametfl3d3_16ns
SequenceVariantSK\SP\MP
SeriesDescriptiontfl_epinav_ME3_1mm_p2 RMS
SeriesNumber8
ShimSetting[2606, 5407, -7554, -76, 11, -507, 193, -253]
SliceThickness1
SoftwareVersionssyngo MR E11
SpoilingStateTrue
StationNameMRC35427
TxRefAmp234.94
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot
md5suma3b6a8bc666aecfcfcc848940a3644ce
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.